Publications for DICE

Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression

Benjamin J Schmiedel, Divya Singh, Ariel Madrigal, Alan G Valdovino-Gonzalez, Brandie M White, Jose Zapardiel-Gonzalo, Brendan Ha, Gokmen Altay, Jason A Greenbaum, Graham McVicker, Grégory Seumois, Anjana Rao, Mitchell Kronenberg, Bjoern Peters, Pandurangan Vijayanand

Cell. 2018 Nov 29;175(6):1701-1715.e16

PMID: 30449622; PMCID: PMC6289654; DOI:10.1016/j.cell.2018.10.022

Promoter-interacting expression quantitative trait loci are enriched for functional genetic variants

Vivek Chandra*, Sourya Bhattacharyya*, Benjamin J Schmiedel, Ariel Madrigal, Cristian Gonzalez-Colin, Stephanie Fotsing, Austin Crinklaw, Gregory Seumois, Pejman Mohammadi, Mitchell Kronenberg, Bjoern Peters, Ferhat Ay, Pandurangan Vijayanand

Nat Genet. 2021 Jan;53(1):110-119

PMID: 33349701; DOI:10.1038/s41588-020-00745-3

COVID-19 genetic risk variants are associated with expression of multiple genes in diverse immune cell types

Benjamin J Schmiedel*, Job Rocha*, Cristian Gonzalez-Colin*, Sourya Bhattacharyya*, Ariel Madrigal, Christian H Ottensmeier, Ferhat Ay, Vivek Chandra, Pandurangan Vijayanand

Nat Commun. 2021 Nov 19;12(1):6760

PMID: 34799557: PMCID: PMC8604964; DOI: 10.1038/s41467-021-26888-3

Single-cell eQTL analysis of activated T cell subsets reveals activation and cell type-dependent effects of disease-risk variants

Benjamin J Schmiedel*, Cristian Gonzalez-Colin*, Vicente Fajardo*, Job Rocha*, Ariel Madrigal, Ciro Ramirez-Suastegui, Sourya Bhattacharyya, Hayley Simon, Jason A Greenbaum, Bjoern Peters, Grégory Seumois, Ferhat Ay, Vivek Chandra, Pandurangan Vijayanand

Sci Immunol. 2022 [in press]