Build Information


Reference Genome

GRCh37.p19

Build Date

6.15.18

DICE Build ID

DICE-DB 1

Funding

NIH R24AI108564

Changelog


2019-06-07

  • Added downloads for eQTL's without P value and TPM filter.

2019-04-01

  • Added ANOVA statistic from MatrixEQTL to VCF files.
  • Added FDR from MatrixEQTL to VCF files.

Protected data


To comply with HIPA regulations, you can apply for access to raw data through dbGaP.

Gene Expression


These files contain RNA expression data for each cell type reported as transcripts per million (TPM). Each row contains the expression value for the gene indicated in column A, and starting in column D are individual replicates from different donors. Replicates from the same donor are not necessarily in the same column.

DICE eQTLs


These files contain eQTL data in VCF format, which list genetic polymorphisms that have a significant association with the expression of a nearby gene. The following thresholds were applied: Adj. P value < 0.05, raw P value < 0.0001 and TPM > 1.0. If the expression of more than one gene is associated with a given SNP, there will be an entry (row) for each polymorphism:gene combination (multiple rows per SNP).

Unfiltered

These files contain eQTL data in VCF format, which list genetic polymorphisms that have a significant association with the expression of a nearby gene.

Licensing


Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 International License.