Associated eQTLs

All SNPs associated with the selected phenotype (as defined by GWAS studies) are displayed in the table below, along with their P values and effect sizes in the DICE cohort. Clicking on a SNP name will bring you to the association plot for the given SNP, gene, and cell type.


SNP Name Gene Ensembl ID Cell Type SNP P Value Effect Size Study

The raw P value from the eQTL analysis for a given SNP implementing the Matrix eQTL package (version 2.1.1). P values of 2 indicate low expression ( < 1 TPM ) across all cell types.

The magnitude of the change in gene expression levels associated with the genetic variant (regression slope comparing allelic effects of REF vs. ALT variant); implementing the Matrix eQTL package (version 2.1.1).